Human
Population Genetics Analysis Suite This Java program suite is intended to assist in the analysis of human population genetics data. [Download] |
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| Paralleled DHSMAP Software
This is an enhanced version of DHSMAP designed for high performance
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| DHS-R Software
A modified version of DHSMAP software by Jian Zhang
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Statistical Explanation for Positional Cloning - stepc Stepc is an implementation of the method discussed in paper "A
statistical
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| Exploration of Departure from Hardy-Weinberg
Equilibrium for Genetic Disease Models
This software allows an exploration of departures from HWE at a single disease locus given a genetic disease model. |
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| Goodness-of-fit Test for a Locus Showing Departure
from HWE
This tool inputs the genotype counts in affected cases and unaffected controls that show a departure form HWE and outputs the best-fit genetic disease model to the observed data. [Download]
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| Case control linkage disequilibrium differences
- CCOLDD
This program detects key features of the LD patterns in cases and controls
for the rapid detection of primary signals in genome-wide association studies.
Using cases and control LDMAP [Maniatis et al. (2002) Proc Natl Acad Sci
99(4): 2228-2233] terse output files, it calculates a LDUcontrol-case/kb
slope metric in windows of variable size and plots the measure against
physical position.
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